PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472427
Common NameARALYDRAFT_472427
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 230aa    MW: 25381.1 Da    PI: 7.2709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472427genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-184797155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++ a ++l+g
  472427 47 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDVALLCLKG 97
            59*****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3048107IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2048107IPR016177DNA-binding domain
PfamPF008474.3E-114897IPR001471AP2/ERF domain
SMARTSM003801.3E-3548111IPR001471AP2/ERF domain
PROSITE profilePS5103222.0148105IPR001471AP2/ERF domain
CDDcd000182.17E-2949105No hitNo description
PRINTSPR003675.3E-94960IPR001471AP2/ERF domain
PRINTSPR003675.3E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVKQERKIQT NTKKEMPLSS SPSSSSSSSS SSSSSSCKNK NKKSKIKKYK GVRMRSWGSW  60
VSEIRAPNQK TRIWLGSYST AEAAARAYDV ALLCLKGPQA NLNFPTSSSH HHLLDDLLDE  120
KTILSPKSIQ RVAAQAANSP DLFAPSSSAV SSPSDHDQHH DDGMQSLMGS FVDNHVSLMN  180
PSSSWYDDHN GMFLFDDGAP FNYSPQLNST TMLDEYFYED ADIPLWSFN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0134820.0AC013482.2 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I, complete sequence.
GenBankAK1766790.0AK176679.1 Arabidopsis thaliana mRNA for TINY like protein, complete cds, clone: RAFL25-22-A03.
GenBankBT0246160.0BT024616.1 Arabidopsis thaliana At1g21910 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890471.11e-169AP2 domain-containing transcription factor family protein
SwissprotQ9SFE41e-127ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLD7KKV71e-169D7KKV7_ARALL; AP2 domain-containing transcription factor family protein
STRINGfgenesh2_kg.1__2381__AT1G21910.11e-168(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-107ERF family protein